Byrd, Alicia K.: search on Z-Library

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1

Increasing the Length of the Single-Stranded Overhang Enhances Unwinding of Duplex DNA by Bacteriophage T4 Dda Helicase †

Byrd, Alicia K., Raney, Kevin D.

Journal:

Year:

2005

Language:

english

File:

PDF, 231 KB

english, 2005

2

Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA

Byrd, Alicia K, Raney, Kevin D

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 326 KB

english, 2004

3

Yeast Helicase Pif1 Unwinds RNA:DNA Hybrids with Higher Processivity than DNA:DNA Duplexes

Chib, Shubeena, Byrd, Alicia K., Raney, Kevin D.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 2.78 MB

english, 2016

4

Superfamily 2 helicases

Byrd, Alicia, K

Journal:

Frontiers in Bioscience

Year:

2012

Language:

english

File:

PDF, 412 KB

english, 2012

5

Structure and function of Pif1 helicase

Byrd, Alicia K., Raney, Kevin D.

Journal:

Biochemical Society Transactions

Year:

2017

Language:

english

File:

PDF, 873 KB

english, 2017

6

Pif1 helicase unfolding of G-quadruplex DNA is highly dependent on sequence and reaction conditions

Byrd, Alicia K., Bell, Matthew R., Raney, Kevin D.

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

7

A serotonin-induced N-glycan switch regulates platelet aggregation

Mercado, Charles P., Quintero, Maritza V., Li, Yicong, Singh, Preeti, Byrd, Alicia K., Talabnin, Krajang, Ishihara, Mayumi, Azadi, Parastoo, Rusch, Nancy J., Kuberan, Balagurunathan, Maroteaux, Luc, K

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

8

DEAD-box RNA helicases Dbp2, Ded1 and Mss116 bind to G-quadruplex nucleic acids and destabilize G-quadruplex RNA

Gao, Jun, Byrd, Alicia K., Zybailov, Boris L., Marecki, John C., Guderyon, Michael J., Edwards, Andrea D., Chib, Shubeena, West, Kirk L., Waldrip, Zachary J., Mackintosh, Samuel G., Gao, Zhaofeng, Put

Journal:

Chemical Communications

Year:

2019

Language:

english

File:

PDF, 2.16 MB

english, 2019

9

A Biochemical and Biophysical Model of G-quadruplex DNA Recognition by Positive Coactivator of Transcription 4

Griffin, Wezley C., Gao, Jun, Byrd, Alicia K., Chib, Shubeena, Raney, Kevin D.

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 2.65 MB

english, 2017

10

Investigation of Translocation, DNA Unwinding, and Protein Displacement by NS3h, the Helicase Domain from the Hepatitis C Virus Helicase

Matlock, Dennis L., Yeruva, Laxmi, Byrd, Alicia K., Mackintosh, Samuel G., Langston, Clint, Brown, Carrie, Cameron, Craig E., Fischer, Christopher J., Raney, Kevin D.

Journal:

Year:

2010

Language:

english

File:

PDF, 3.41 MB

english, 2010

11

Evidence that G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress

Byrd, Alicia K., Zybailov, Boris L., Maddukuri, Leena, Gao, Jun, Marecki, John C., Jaiswal, Mihir, Bell, Matthew R., Griffin, Wezley C., Reed, Megan R., Chib, Shubeena, Mackintosh, Samuel G., MacNicol

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 3.61 MB

english, 2016

12

N-Naphthoyl-substituted indole thio-barbituric acid analogs inhibit the helicase activity of the hepatitis C virus NS3

Marecki, John C., Aarattuthodiyil, Suja, Byrd, Alicia K., Penthala, Narsimha R., Crooks, Peter A., Raney, Kevin D.

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2018

Language:

english

File:

PDF, 2.66 MB

english, 2018

13

Rapid Communication: Effects of Tobacco Processing on the Quantity of Benzo[a]Pyrene in Mainstream Smoke

Martin, Lin Alicia, Byrd, Sherell, Milofsky, Robert

Journal:

Journal of Toxicology and Environmental Health

Year:

2003

Language:

english

File:

PDF, 113 KB

english, 2003

14

Hepatitis C Virus NS3 and Simian Virus 40 T Antigen Helicases Displace Streptavidin from 5‘-Biotinylated Oligonucleotides but Not from 3‘-Biotinylated Oligonucleotides: Evidence for Directional Bias in Translocation on Single-Stranded DNA †

Morris, Patrick D., Byrd, Alicia K., Tackett, Alan J., Cameron, Craig E., Tanega, Poonam, Ott, Robert, Fanning, Ellen, Raney, Kevin D.

Journal:

Year:

2002

Language:

english

File:

PDF, 92 KB

english, 2002

15

Yeast Pif1 Accelerates Annealing of Complementary DNA Strands

Ramanagoudr-Bhojappa, Ramanagouda, Byrd, Alicia K., Dahl, Christopher, Raney, Kevin D.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

16

A CRISPR-based approach for proteomic analysis of a single genomic locus

Waldrip, Zachary J, Byrum, Stephanie D, Storey, Aaron J, Gao, Jun, Byrd, Alicia K, Mackintosh, Samuel G, Wahls, Wayne P, Taverna, Sean D, Raney, Kevin D, Tackett, Alan J

Journal:

Year:

2014

Language:

english

File:

PDF, 473 KB

english, 2014

17

Genome Maintenance by DNA Helicase B

Hazeslip, Lindsey, Zafar, Maroof Khan, Chauhan, Muhammad Zain, Byrd, Alicia K.

Journal:

Year:

2020

File:

PDF, 889 KB

2020

18

G-Quadruplex loops regulate PARP-1 enzymatic activation

Edwards, Andrea D, Marecki, John C, Byrd, Alicia K, Gao, Jun, Raney, KevinÂ D

Journal:

Nucleic Acids Research

Year:

2021

File:

PDF, 6.96 MB

2021

19

A Bis-Alkylating Triplex Forming Oligonucleotide Inhibits Intracellular Reporter Gene Expression and Prevents Triplex Unwinding Due to Helicase Activity †

Ziemba, Amy J., Reed, Michael W., Raney, Kevin D., Byrd, Alicia B., Ebbinghaus, Scot W.

Journal:

Year:

2003

Language:

english

File:

PDF, 325 KB

english, 2003

20

The T4 Phage SF1B Helicase Dda Is Structurally Optimized to Perform DNA Strand Separation

Xiaoping He, Alicia K. Byrd, Mi-Kyung Yun, Charles W. Pemble IV, David Harrison, Laxmi Yeruva, Christopher Dahl, Kenneth N. Kreuzer, Kevin D. Raney, Stephen W. White

Journal:

Year:

2012

Language:

english

File:

PDF, 1.68 MB

english, 2012

21

Autophagy is the predominant process induced by arsenite in human lymphoblastoid cell lines

Alicia M. Bolt, Randi M. Byrd, Walter T. Klimecki

Journal:

Toxicology and Applied Pharmacology

Year:

2010

Language:

english

File:

PDF, 1.36 MB

english, 2010

22

Yeast transcription co-activator Sub1 and its human homolog PC4 preferentially bind to G-quadruplex DNA

Gao, Jun, Zybailov, Boris L., Byrd, Alicia K., Griffin, Wezley C., Chib, Shubeena, Mackintosh, Samuel G., Tackett, Alan J., Raney, Kevin D.

Journal:

Chemical Communications

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

23

Expression of human DNA helicase B is affected by G-quadruplexes in the promoter

Zafar, Maroof, Hazeslip, Lindsey, Chauhan, Muhammad, Byrd, Alicia K.

Journal:

Year:

2020

File:

PDF, 2.51 MB

2020

24

proteiNorm â A User-Friendly Tool for Normalization and Analysis of TMT and Label-Free Protein Quantification

Graw, Stefan, Tang, Jillian, Zafar, Maroof K, Byrd, Alicia K, Bolden, Chris, Peterson, Eric C., Byrum, Stephanie D

Journal:

Year:

2020

File:

PDF, 2.16 MB

2020

25

Novel, fluorescent, SSB protein chimeras with broad utility

Juan Liu, Meerim Choi, Adam G. Stanenas, Alicia K. Byrd, Kevin D. Raney, Christopher Cohan, Piero R. Bianco

Journal:

Protein Science

Year:

2011

Language:

english

File:

PDF, 1.98 MB

english, 2011

26

Dda Helicase Tightly Couples Translocation on Single-Stranded DNA to Unwinding of Duplex DNA: Dda Is an Optimally Active Helicase

Alicia K. Byrd, Dennis L. Matlock, Debjani Bagchi, Suja Aarattuthodiyil, David Harrison, Vincent Croquette, Kevin D. Raney

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.35 MB

english, 2012

27

A Parallel Quadruplex DNA Is Bound Tightly but Unfolded Slowly by Pif1 Helicase

Byrd, Alicia K., Raney, Kevin D.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.76 MB

english, 2015

28

Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases

Su, Nannan, Byrd, Alicia K., Bharath, Sakshibeedu R., Yang, Olivia, Jia, Yu, Tang, Xuhua, Ha, Taekjip, Raney, Kevin D., Song, Haiwei

Journal:

Nature Communications

Year:

2019

File:

PDF, 2.19 MB

2019

29

SSB binds to the RecG and PriA helicases in vivo in the absence of DNA

Yu, Cong, Tan, Hui Yin, Choi, Meerim, Stanenas, Adam J., Byrd, Alicia K., D. Raney, Kevin, Cohan, Christopher S., Bianco, Piero R.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

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